diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb
index ee2c1f13ee7f31fd7020bc6acd813e8b82e694f9..1ea5df5ea2e51ea2ee90ca8a3175b27f6441e70b 100644
--- a/ProcessFASTQ.ipynb
+++ b/ProcessFASTQ.ipynb
@@ -41,7 +41,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 114,
+   "execution_count": 139,
    "metadata": {
     "collapsed": false
    },
@@ -95,7 +95,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 115,
+   "execution_count": 140,
    "metadata": {
     "collapsed": false
    },
@@ -117,7 +117,7 @@
       "flowcell362_lane4_pair1_Undetermined\n",
       "flowcell384_lane7_pair1_ACAGTG \t\t Processsed\n",
       "flowcell384_lane7_pair1_ACTTGA \t\t Processsed\n",
-      "flowcell384_lane7_pair1_CAGATC\n",
+      "flowcell384_lane7_pair1_CAGATC \t\t Processsed\n",
       "flowcell384_lane7_pair1_GATCAG\n",
       "flowcell384_lane7_pair1_TGACCA\n",
       "testing\n"
@@ -149,8 +149,8 @@
     "# fname = \"flowcell362_lane4_pair1_Undetermined\"\n",
     "# fname = \"flowcell384_lane7_pair1_ACAGTG\"\n",
     "# fname = \"flowcell384_lane7_pair1_ACTTGA\"\n",
-    "fname = \"flowcell384_lane7_pair1_CAGATC\"\n",
-    "# fname = \"flowcell384_lane7_pair1_GATCAG\"\n",
+    "# fname = \"flowcell384_lane7_pair1_CAGATC\"\n",
+    "fname = \"flowcell384_lane7_pair1_GATCAG\"\n",
     "# fname = \"flowcell384_lane7_pair1_TGACCA\"\n",
     "\n",
     "# Print available files in 0-Raws/ directory\n",
@@ -208,7 +208,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 116,
+   "execution_count": 141,
    "metadata": {
     "collapsed": false
    },
@@ -231,7 +231,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 117,
+   "execution_count": 142,
    "metadata": {
     "collapsed": false
    },
@@ -239,10 +239,10 @@
     {
      "data": {
       "text/plain": [
-       "'flowcell384_lane7_pair1_CAGATC.fastq.gz'"
+       "'flowcell384_lane7_pair1_GATCAG.fastq.gz'"
       ]
      },
-     "execution_count": 117,
+     "execution_count": 142,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -266,7 +266,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 118,
+   "execution_count": 143,
    "metadata": {
     "collapsed": false
    },
@@ -276,12 +276,12 @@
      "output_type": "stream",
      "text": [
       "\n",
-      "flowcell384_lane7_pair1_CAGATC\n",
+      "flowcell384_lane7_pair1_GATCAG\n",
       "\n",
-      "@SN279:498:C88PKACXX:7:1109:1531:2224 1:N:0:CAGATC\n",
-      "NAGAGGTGCACAATCGACCGATCCTGACTGTAGGCACCATCAATAGATCGG\n",
+      "@SN279:498:C88PKACXX:7:1109:1982:2231 1:N:0:GATCAG\n",
+      "NATAGTGTAGTGGTTATCACTTTCGCTGTAGGCACCATCAATAGATCGGAA\n",
       "+\n",
-      "#1=DADEFHHHHHIIIIIHIIIIGIIIE?B??GB?FH;BCC3B)7888=DE\n"
+      "#1:DDFFFHFCFHCGIIJJJJJJAHHIJJIIIJJIJIJIIGIGIJJIJJII\n"
      ]
     }
    ],
@@ -303,7 +303,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 119,
+   "execution_count": 144,
    "metadata": {
     "collapsed": false
    },
@@ -312,7 +312,7 @@
      "name": "stdout",
      "output_type": "stream",
      "text": [
-      "Processing will take approximatively 0 hour(s) 38 minute(s) and 1 second(s)\n"
+      "Processing will take approximatively 0 hour(s) 30 minute(s) and 43 second(s)\n"
      ]
     }
    ],
@@ -358,7 +358,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 120,
+   "execution_count": null,
    "metadata": {
     "collapsed": false
    },
@@ -370,21 +370,11 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 121,
+   "execution_count": null,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "This is cutadapt 1.9.1 with Python 3.5.1\n",
-      "Command line parameters: -a CTGTAGGCACCATCAATAGATCGGAA -o 1-Cutadapted/flowcell384_lane7_pair1_CAGATC.fastq.gz --quiet flowcell384_lane7_pair1_CAGATC.fastq.gz\n",
-      "Trimming 1 adapter with at most 10.0% errors in single-end mode ...\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "%%bash\n",
     "source ./source\n",
@@ -402,19 +392,11 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 122,
+   "execution_count": null,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Cutadapt run time : 0:35:36.501319\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "# Store current time\n",
     "after = datetime.datetime.now()\n",
@@ -427,7 +409,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 123,
+   "execution_count": null,
    "metadata": {
     "collapsed": true
    },
@@ -448,7 +430,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 124,
+   "execution_count": null,
    "metadata": {
     "collapsed": false
    },
@@ -460,7 +442,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 125,
+   "execution_count": null,
    "metadata": {
     "collapsed": false
    },
@@ -475,19 +457,11 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 126,
+   "execution_count": null,
    "metadata": {
     "collapsed": false
    },
-   "outputs": [
-    {
-     "name": "stdout",
-     "output_type": "stream",
-     "text": [
-      "Zcat run time : 0:00:34.672678\n"
-     ]
-    }
-   ],
+   "outputs": [],
    "source": [
     "# Store current time\n",
     "after = datetime.datetime.now()\n",