diff --git a/ProcessFASTQ.ipynb b/ProcessFASTQ.ipynb index fd66db5ea5ae06dd0a0da8a869fec0a60d50139d..4bb8310b47c78c3edef818db6a98923d29c4294c 100644 --- a/ProcessFASTQ.ipynb +++ b/ProcessFASTQ.ipynb @@ -550,7 +550,7 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 179, "metadata": { "collapsed": false }, @@ -598,12 +598,28 @@ }, { "cell_type": "code", - "execution_count": null, + "execution_count": 180, "metadata": { "collapsed": false, "scrolled": false }, - "outputs": [], + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Time loading forward index: 00:00:00\n", + "Time loading mirror index: 00:00:00\n", + "End-to-end 2/3-mismatch full-index search: 00:04:29\n", + "# reads processed: 46620824\n", + "# reads with at least one reported alignment: 33736079 (72.36%)\n", + "# reads that failed to align: 12884745 (27.64%)\n", + "Reported 33736079 alignments to 1 output stream(s)\n", + "Time searching: 00:04:29\n", + "Overall time: 00:04:29\n" + ] + } + ], "source": [ "%%bash\n", "source ./source\n",